Finding the unloaded geometry#
from fenics_plotly import plot
import pulse
geometry = pulse.HeartGeometry.from_file(pulse.mesh_paths["simple_ellipsoid"])
# geometry = pulse.geometries.prolate_ellipsoid_geometry(mesh_size_factor=3.0)
material = pulse.NeoHookean()
# material = pulse.Guccione()
2024-04-11 13:27:04,134 [623] INFO pulse.geometry_utils:
Load mesh from h5
# Parameter for the cardiac boundary conditions
bcs_parameters = pulse.MechanicsProblem.default_bcs_parameters()
bcs_parameters["base_spring"] = 1.0
bcs_parameters["base_bc"] = "fix_x"
# Create the problem
problem = pulse.MechanicsProblem(geometry, material, bcs_parameters=bcs_parameters)
# Suppose geometry is loaded with a pressure of 1 kPa
# and create the unloader
unloader = pulse.FixedPointUnloader(problem=problem, pressure=3.0)
2024-04-11 13:27:04,264 [623] INFO pulse.unloader:
-------------------------- Unloading options ---------------------------
Target pressure: 3.0
maxiter = 10
tolerance = 0.0001
regenerate_fibers (serial only)= False
------------------------------------------------------------------------
# Unload the geometry
unloader.unload()
2024-04-11 13:27:04,269 [623] INFO pulse.unloader: ------------------------------------------------------------------------
2024-04-11 13:27:04,270 [623] INFO pulse.unloader: ----------------------------Start unloading-----------------------------
2024-04-11 13:27:04,271 [623] INFO pulse.unloader: ------------------------------------------------------------------------
2024-04-11 13:27:04,301 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:27:04,302 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:27:04,302 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:27:04,303 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:27:04,473 [623] DEBUG UFL_LEGACY: Blocks of each mode:
1 full
2024-04-11 13:27:05,293 [623] INFO pulse.unloader:
LV Volume of original geometry = 0.749 ml
2024-04-11 13:27:05,309 [623] INFO pulse.unloader:
Do an intial solve
2024-04-11 13:27:05,397 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:27:05,397 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:27:05,398 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:27:05,398 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:27:05,399 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:27:05,911 [623] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2024-04-11 13:27:05,986 [623] DEBUG UFL_LEGACY: Blocks of each mode:
2024-04-11 13:27:06,192 [623] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2024-04-11 13:27:45,119 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:27:45,120 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:27:45,121 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:27:45,121 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:27:45,122 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:27:45,309 [623] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2024-04-11 13:27:45,383 [623] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-04-11 13:27:45,574 [623] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-04-11 13:27:49,057 [623] INFO pulse.unloader:
Iteration: 0
2024-04-11 13:27:52,649 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-04-11 13:27:52,690 [623] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-04-11 13:27:56,911 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:27:56,915 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-04-11 13:27:56,960 [623] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-04-11 13:27:57,361 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:27:57,405 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:27:57,406 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:27:57,449 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:27:57,450 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:27:57,488 [623] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.568 ml
2024-04-11 13:27:57,639 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:27:57,640 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:27:57,641 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:27:57,642 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:27:57,642 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:27:57,935 [623] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2024-04-11 13:27:58,009 [623] DEBUG UFL_LEGACY: Blocks of each mode:
2024-04-11 13:27:58,271 [623] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2024-04-11 13:28:37,033 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:28:37,033 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:28:37,034 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:28:37,034 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:28:37,035 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-04-11 13:28:37,172 [623] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2024-04-11 13:28:37,246 [623] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-04-11 13:28:37,434 [623] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-04-11 13:28:40,889 [623] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.568 ml
2024-04-11 13:28:41,064 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:41,065 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:41,107 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:41,108 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:41,150 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:41,151 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:41,189 [623] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.717 ml
2024-04-11 13:28:41,201 [623] INFO pulse.unloader:
Residual: 0.011328623428538017
2024-04-11 13:28:41,201 [623] INFO pulse.unloader:
Iteration: 1
2024-04-11 13:28:41,374 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:41,375 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:41,417 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:41,418 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:41,459 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:41,460 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:41,497 [623] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.596 ml
2024-04-11 13:28:44,518 [623] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.596 ml
2024-04-11 13:28:44,690 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:44,691 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:44,734 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:44,735 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:44,777 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:44,778 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:44,817 [623] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.754 ml
2024-04-11 13:28:44,829 [623] INFO pulse.unloader:
Residual: 0.001698010214540199
2024-04-11 13:28:44,829 [623] INFO pulse.unloader:
Iteration: 2
2024-04-11 13:28:45,001 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:45,002 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:45,044 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:45,045 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:45,087 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:45,088 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:45,125 [623] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.592 ml
2024-04-11 13:28:48,154 [623] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.592 ml
2024-04-11 13:28:48,327 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:48,328 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:48,370 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:48,371 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:48,413 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:48,414 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:48,453 [623] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.749 ml
2024-04-11 13:28:48,465 [623] INFO pulse.unloader:
Residual: 0.0002592876931300245
2024-04-11 13:28:48,465 [623] INFO pulse.unloader:
Iteration: 3
2024-04-11 13:28:48,643 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:48,644 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:48,686 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:48,687 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:48,727 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:48,728 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:48,765 [623] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.593 ml
2024-04-11 13:28:51,772 [623] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.593 ml
2024-04-11 13:28:51,946 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:51,947 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:51,989 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:51,990 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:52,032 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:52,034 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:52,072 [623] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.750 ml
2024-04-11 13:28:52,084 [623] INFO pulse.unloader:
Residual: 3.931304295917144e-05
2024-04-11 13:28:52,085 [623] INFO pulse.unloader: ########################################################################
Unloading suceeding
# Get the unloaded geometry
unloaded_geometry = unloader.unloaded_geometry
2024-04-11 13:28:52,262 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:52,263 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:52,305 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:52,307 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:52,348 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-04-11 13:28:52,350 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
fig = plot(geometry.mesh, opacity=0.0, show=False)
fig.add_plot(plot(unloaded_geometry.mesh, color="red", show=False))
fig.show()